ida-mdc / app-fiji / 0.1.0-SNAPSHOT

Fiji

Fiji is just ImageJ
Dummy cover image.
Tags
fijiimagej
Citation
10.1038/nmeth.2019Schindelin, J.; Arganda-Carreras, I. & Frise, E. et al. (2012), "Fiji: an open-source platform for biological-image analysis", Nature methods 9(7): 676-682, PMID 22743772
Solution written by
Deborah Schmidt
Solution DOI
Documentation
GIT
https://github.com/ida-mdc/capture-knowledge
License of solution
MIT

Arguments

No arguments

How to run

.. via graphical user interface
If you haven't already, install the album app.
Download ZIP by clicking here, unzip it and execute image/bin/album.
Download ZIP by clicking here, unzip it and execute image/bin/album.bat.
Download ZIP by clicking here, unzip it and execute image/bin/album.
Launch the album app and, if you are launching it for the first time, follow the instructions for installing album on your machine.
You can add this catalog to your collection by pressing the Add catalog button and pasting this URL into the popup window:

https://gitlab.com/album-app/catalogs/capture-knowledge

Load your collection by clicking Load collection and select the catalog named capture-knowledge. On the right, scroll to ida-mdc:app-fiji.
.. via command line
Create an album conda environment and activate it:
conda env create -f https://gitlab.com/album-app/album/-/raw/main/album.yml
conda activate album
You can add this catalog to your collection:
album add-catalog https://gitlab.com/album-app/catalogs/capture-knowledge
album update capture-knowledge
album upgrade capture-knowledge
.. and launch the solution by name:
album install ida-mdc:app-fiji:0.1.0-SNAPSHOT
album run ida-mdc:app-fiji:0.1.0-SNAPSHOT